Errors after upgrading to Piwik 3.0.0-beta1

@stibay wrote:

After upgrading to Piwik 3.0.0-beta1 I have a lot of warnings from PrivacyManager on the dashboard.
This is with the PrivacyManager plugin disabled.

On system check everything is green but it looks like there is alot of files under file integrity that's different. Have tried to delete all the files and copy them over again.

Running Windows Server 2008 R2 (7601 SP1)
MySQL: 5.7.11
PHP: 5.6.26
IIS: 7.5.7600.16385

WARNING: C:...\Piwik\plugins\PrivacyManager\PrivacyManager.php(228):
Notice - Undefined index: delete_reports_older_than
Undefined index: delete_reports_keep_basic_metrics
Undefined index: delete_reports_enable
Undefined index: enable_auto_database_size_estimate
Undefined index: delete_logs_older_than
Undefined index: delete_logs_max_rows_per_query
Undefined index: delete_reports_keep_day_reports
Undefined index: delete_reports_keep_week_reports
Undefined index: delete_logs_older_than
Undefined index: delete_logs_enable
Undefined index: delete_reports_keep_segment_reports
Undefined index: delete_reports_keep_range_reportst
Undefined index: delete_reports_keep_month_reportst
Undefined index: delete_reports_keep_year_reportst
Undefined index: delete_logs_schedule_lowest_intervalt
Undefined index: delete_logs_enablet
Undefined index: delete_reports_keep_basic_metricst
Undefined index: delete_reports_keep_day_reportst
Undefined index: delete_reports_older_thant
Undefined index: delete_reports_enablet
Undefined index: delete_logs_max_rows_per_queryt
Undefined index: enable_auto_database_size_estimatet
Undefined index: delete_reports_keep_week_reportst
Undefined index: delete_reports_keep_month_reportst
Undefined index: delete_reports_keep_segment_reportst
Undefined index: delete_reports_keep_range_reportst
Undefined index: delete_reports_keep_year_reportst
Undefined index: delete_logs_older_thant

WARNING: C:\WebApps\Piwik\core\Archive\ArchiveInvalidator.php(296):
Undefined index: delete_logs_older_thant
Undefined index: delete_logs_enablet

If I try to enable the plugin and navigate to /index.php?module=PrivacyManager....etc I get this error.
Error in Piwik: Key "delete_logs_enable" for array with keys "delete_logs_enable, delete_logs_schedule_lowest_interval, delete_logs_older_than, delete_logs_max_rows_per_query, enable_auto_database_size_estimate, delete_reports_enable, delete_reports_older_than, delete_reports_keep_basic_metrics, delete_reports_keep_day_reports, delete_reports_keep_week_reports, delete_reports_keep_month_reports, delete_reports_keep_year_reports, delete_reports_keep_range_reports, delete_reports_keep_segment_reports" does not exist in "@PrivacyManager/privacySettings.twig" at line 91

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